Installation Instructions

Essentials

  • Install R, version 3.4 or greater
  • (Optional) Highly recommend install RStudio
  • Install Cookie from github

    • if (!require("devtools")) {install.packages("devtools")}

    devtools::install_github("WilsonImmunologyLab/Cookie",dependencies = TRUE)

Dependencies

Most of dependencies can be installed when install Cookie, some packages may need to be installed seprately. Users can copy the all-in-one command collections below:

    if(!require("ggplot2")) install.packages("ggplot2")

    if(!require("cluster")) install.packages("cluster")

    if(!require("reshape2")) install.packages("reshape2")

    if(!require("umap")) install.packages("umap")

    if(!require("Rfast")) install.packages("Rfast")

    if(!require("Rtsne")) install.packages("Rtsne")

    if(!require("Rcpp")) install.packages("Rcpp")

    if (!require("devtools")) {install.packages("devtools")}

    devtools::install_github("ricardo-bion/ggradar",dependencies = TRUE)


Click to show a detailed list of all dependencies and installation tips.